VISDB Viral Integration Site DataBase

VIS ID

TVIS10014572

Fusion event

HBV-CNTLN integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|Polymerase|

Start

1479

Orient

-

Integrated sequence

CTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGG| |GACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCG

Chromosome

chr9

Cytoband

p22.2

Reference genome

Start

End

17407948/17407950 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-10a-5p ; hsa-mir-129-5p ; hsa-mir-8055 ; hsa-mir-222-5p ; hsa-mir-545-5p ; hsa-mir-548m ; hsa-mir-329-5p ; hsa-mir-15b-3p ; hsa-mir-3122 ; hsa-mir-3913-5p ; hsa-mir-450a-1-3p ; hsa-mir-6513-5p ; hsa-mir-6716-5p ; hsa-mir-887-5p ; hsa-mir-3672 ; hsa-mir-6818-3p ; hsa-mir-6864-3p

Nearest miRNA

hsa-mir-101-2/Upstream/11400046; hsa-let-7a-1/Downstream/1165356;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/272242, chr9-CpG: 120/Downstream/170773

Upstream sequence

AAAAAACTCCAAACAAAAATTCTTATGTAATTTTAATATTTCTGAATTTTACCACGTATTCTTTTCAAACTCTCAAAGTATTATTTATATTTTCTGTTAA

Downstream sequence

ccccatctctcctaaaaatacaaaaaattagccaggcatcgtggtgggcacctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacc