VISDB Viral Integration Site DataBase

VIS ID

TVIS10014578

Fusion event

HBV-CDC14B integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

Polymerase|

Start

1369

Orient

+

Integrated sequence

ATACTGCGGAACTCCTAGCCGCTTGTTTTGCTCGCAGCAGGTCTGGAGCAAACATTATCGGGACTGATAACTCTGTTGTCCTATCCCGCAAATATACATC| |GTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGG

Chromosome

chr9

Cytoband

q22.33

Reference genome

Start

End

99281075/96518793 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-124-3p ; hsa-mir-26b-5p ; hsa-mir-3591-5p ; hsa-mir-3611 ; hsa-mir-142-3p ; hsa-mir-1257 ; hsa-mir-4255 ; hsa-mir-369-3p ; hsa-mir-429 ; hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-8084 ; hsa-mir-6746-5p ; hsa-mir-4533 ; hsa-mir-6516-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-455-3p ; hsa-mir-6731-5p ; hsa-mir-8085 ; hsa-mir-6878-5p ; hsa-mir-5192 ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-4722-5p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-1827 ; hsa-mir-6770-5p ; hsa-mir-3192-5p ; hsa-mir-4649-3p ; hsa-mir-4768-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-7851-3p ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-mir-490-3p ; hsa-mir-6888-3p ; hsa-mir-4284 ; hsa-mir-3120-5p ; hsa-mir-1304-3p ; hsa-mir-6890-3p ; hsa-mir-6796-3p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-4252 ; hsa-mir-4638-3p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-1292-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-3529-3p ; hsa-mir-2276-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-452-3p ; hsa-mir-542-3p ; hsa-mir-302a-5p ; hsa-mir-3919 ; hsa-mir-5582-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-4634 ; hsa-mir-4532 ; hsa-mir-1247-3p ; hsa-mir-1206 ; hsa-mir-150-5p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-3664-3p ; hsa-mir-3929 ; hsa-mir-4279 ; hsa-mir-4419b ; hsa-mir-4478 ; hsa-mir-4695-5p ; hsa-mir-4722-3p ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-562 ; hsa-mir-5690 ; hsa-mir-5697 ; hsa-mir-665 ; hsa-mir-6727-3p ; hsa-mir-6747-3p ; hsa-mir-6778-3p ; hsa-mir-6814-5p ; hsa-mir-7160-5p

Nearest miRNA

hsa-let-7a-1/Upstream/1432699; hsa-mir-12126/Downstream/844761;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/21554, chr9-CpG: 76/Downstream/47735

Upstream sequence

cctaataagggaactgggcaggtggggataactaaaaaggagtgcttaaaagagtattgtctaagttggcactagatttggggagttttaagaggtttag

Downstream sequence

TCAGCATTATAGATGGTTACTTTTTCCTCTAGTAAACCTCATGGCTTAAGAATTATTTTCCggccgggtgcagtggctcacacctgtaatcccagcactt