Fusion event
HBV-RPP40 integration
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Region type
precore/core protein|Core and e antigen|
Integrated sequence
ATAAAGAATTTGGAGCTACTGTGGAGTTACTCTCGTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCG| |GGAAGCCTTAGAGTCTCCTGAGCATTGTTCACCTCACCATACTGCACTCAGGCAAGCAATTCTTTGCTGGGGGGAACTAATGACTCTAGCTACCTGGGTG
End
5001670/5001436 (Hg38)
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-4645/Upstream/2147329; hsa-mir-10398/Downstream/146797;
Upstream sequence
gaccagcttggttgtggagaccctaacccagcggcgctagaggacccacacacagaaatatagcatgtggagtaggaaatcaggggactcacagccttca
Downstream sequence
GTTCTTCATATCTTCACTGGAGAGGACACACATGGGGGCTACCACAAGATAAGCATGTGGCCACTGTACAGGTGAGTTATGTAGTGTGGGTGGAATCCCT
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.