VISDB Viral Integration Site DataBase

VIS ID

TVIS10014607

Fusion event

HBV-PARD3 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

precore/core protein|Core and e antigen|

Start

1915

Orient

+

Integrated sequence

ATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACC| |CTTATAAAGAATTTGGAGCTACTGTGGAGTTACTCTCGTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTA

Chromosome

chr10

Cytoband

p11.21

Reference genome

Start

End

34836634/34547706 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-483-3p ; hsa-mir-93-3p ; hsa-mir-766-3p ; hsa-mir-218-5p ; hsa-mir-4503 ; hsa-mir-6839-3p ; hsa-mir-6836-3p ; hsa-mir-5001-3p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-6792-5p ; hsa-mir-629-5p ; hsa-mir-3194-3p ; hsa-mir-7158-5p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-660-3p ; hsa-mir-6796-3p ; hsa-mir-5089-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-2861 ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-661 ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-150-5p ; hsa-mir-6747-3p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6504-3p ; hsa-mir-512-3p ; hsa-mir-4438 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-1261 ; hsa-mir-129-5p ; hsa-mir-3201 ; hsa-mir-4791 ; hsa-mir-5004-3p ; hsa-mir-7850-5p ; hsa-mir-8068

Nearest miRNA

hsa-mir-1265/Upstream/4179041; hsa-mir-107/Downstream/531892;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/1210437, chr10-CpG: 188/Downstream/266490

Upstream sequence

GATAGTAAGTACTTGGGTGAGTTCCCGATAGGACAGGTTATCACTGAGTGCGCTTTCCTTTTCTTCCCATGCCATGACCTGACATCTATTGACCAAGTGG

Downstream sequence

TGACTCCAATTAAAATGCTATTGCTTAATGATGACAAAAAATGCACTGCACAGATGGAAAAAAGAAAAAAACATATTTCAGGCAATGATGATGCTTAAAA