Basic Information
VIS ID
TVIS10014619
Fusion event
HBV-chr4 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
AP011098.1
Start
1829
Orient
+
Integrated sequence
CTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACC| |TCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTTGG
Host Sequence
Chromosome
chr4
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
151954237/151033085 (Hg38)
End
151954237/151033085 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-12113/Upstream/3250417; hsa-mir-1305/Downstream/1456242;
Nearest TSS
ENST00000502981/Upstream/17358; ENST00000503002/Downstream/66488;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/16718, chr4-CpG: 66/Downstream/66233
Nearby gene
AK4P6(-5468) ;
Upstream sequence
catatttgtgtgctgcatccattaactcgtcatttacattaggtatatctcctaatgctgtcccaccccactcccccaaccccacaacaggccccggtgt
Downstream sequence
ctcagcctcctgagtagctgggactacaagcacccatcaccacacccagctaatttttgaatttttagtagagacgaggtttcgccatgttggccaggct
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate