VISDB Viral Integration Site DataBase

VIS ID

TVIS10014622

Fusion event

HBV-TVP23C integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1681

Orient

-

Integrated sequence

CACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAGGTCTTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAAT| |GTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGC

Chromosome

chr17

Cytoband

p12

Reference genome

Start

End

15412636/15509322 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-376a-2-5p ; hsa-mir-3935 ; hsa-mir-3674 ; hsa-mir-3658 ; hsa-mir-29b-2-5p ; hsa-mir-582-5p ; hsa-mir-101-3p ; hsa-mir-4775 ; hsa-mir-3653-3p ; hsa-mir-299-5p ; hsa-mir-24-2-5p ; hsa-mir-24-1-5p ; hsa-mir-509-3p ; hsa-mir-935 ; hsa-mir-6512-5p ; hsa-mir-376c-3p ; hsa-mir-5683 ; hsa-mir-338-5p ; hsa-mir-3978 ; hsa-mir-32-3p ; hsa-mir-1287-3p ; hsa-mir-1287-5p ; hsa-mir-3135b ; hsa-mir-5699-5p ; hsa-mir-875-3p ; hsa-mir-6793-3p ; hsa-mir-6769a-3p ; hsa-mir-4323 ; hsa-mir-3943 ; hsa-mir-5582-3p ; hsa-mir-651-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-6771-5p ; hsa-mir-4722-5p ; hsa-mir-1286 ; hsa-mir-873-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-20b-3p ; hsa-mir-6746-5p ; hsa-mir-2114-5p ; hsa-mir-5588-3p ; hsa-mir-5690 ; hsa-mir-7977 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-3622b-5p ; hsa-mir-6720-3p ; hsa-mir-668-5p ; hsa-mir-4787-3p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-6880-5p ; hsa-mir-4653-3p ; hsa-mir-4252 ; hsa-mir-6499-3p ; hsa-mir-4537 ; hsa-mir-1292-3p ; hsa-mir-4684-5p ; hsa-mir-4755-3p ; hsa-mir-664a-5p ; hsa-mir-4794 ; hsa-mir-8073 ; hsa-mir-221-5p ; hsa-mir-6827-3p ; hsa-mir-340-3p ; hsa-mir-4793-5p ; hsa-mir-3613-3p ; hsa-mir-6502-3p ; hsa-mir-433-5p ; hsa-mir-6771-3p ; hsa-mir-548c-3p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-4470 ; hsa-mir-661 ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-759 ; hsa-mir-5586-3p ; hsa-mir-508-5p ; hsa-mir-4797-5p ; hsa-mir-1273h-5p ; hsa-mir-149-3p ; hsa-mir-1827 ; hsa-mir-25-5p ; hsa-mir-30b-3p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3122 ; hsa-mir-3612 ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-383-3p ; hsa-mir-3913-5p ; hsa-mir-3937 ; hsa-mir-4459 ; hsa-mir-450a-1-3p ; hsa-mir-4728-5p ; hsa-mir-6087 ; hsa-mir-650 ; hsa-mir-6513-5p ; hsa-mir-658 ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6788-5p ; hsa-mir-6799-5p ; hsa-mir-6808-5p ; hsa-mir-6883-5p ; hsa-mir-6893-5p ; hsa-mir-7106-5p ; hsa-mir-887-5p ; hsa-mir-940

Nearest miRNA

hsa-mir-1253/Upstream/257626; hsa-mir-10226/Downstream/772692;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/167513, chr17-CpG: 71/Downstream/53723

Upstream sequence

ACCTCTAACAGAGGGAGGCGCCTGGCACCAACCAACCAGTCAGaaggacctggaggctctgggttcagcccacataaaccccttagttgctggaccaagg

Downstream sequence

ggaggtggtagggggacagcccaggggacaggatgcacttgggaggcctggagcagctgctggctacaactagtcaggaaatactttagaaagttgacag