Basic Information
VIS ID
TVIS10014633
Fusion event
HBV-LOC107986397 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
AP011098.1
Start
3215
Orient
+
Integrated sequence
CAGCGCCTCCTCCTGCCTCCACCAATCGGCAGTCAGGAAGACAGCCTACTCCCATCTCTCCACCTCTAAGAGACAGTCATCCTCAGGCCATGCAGTGGAA| |
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
1553015/1552900 (Hg38)
End
1553015/1552900 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107986397
Nearest miRNA
hsa-mir-4457/Upstream/42044; hsa-mir-10397/Downstream/155885;
Nearest TSS
ENST00000502646/Upstream/1190; ENST00000605200/Downstream/41726;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/28427, chr5-CpG: 18/Downstream/20
Upstream sequence
TTACTGTTGCTATTAGTAACATGATAACAGTGATTACCCCTTATGGAGAGCCTTCTCTGTACCGCCTTTTACAGTGGGTAGtgttttagtttaggtccct
Downstream sequence
TAGCAGCCACCCCACTTTCCCGCCGGGCTGGGCCACGATGCTGACCCAGCGACACACAGCTCCCTTGTGTTCCCGCTGGACGCTGGCCCGGCGGCCGTGG
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate