Basic Information
VIS ID
TVIS10014637
Fusion event
HBV-chr5 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
AP011098.1
Start
3060
Orient
-
Integrated sequence
AAACAATCCAGATTGGGACTTCAACCCCAACAAGGATCACTGGCCAGAGGCAAATCAGGTAGGAGCGGGAGCATTCGGGCCAGGGTTCACCCCACCACAC| |GGCGGTCTTTTGGGGTGGAGCCCTCAGGCTCAGGGCATATTGACAACAGTGCCAGCAGCGCCTCCTCCTGCCTCCACCAATCGGCAGTCAGGAAGACAGC
Host Sequence
Chromosome
chr5
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
62576191/63280364 (Hg38)
End
62576191/63280364 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-10397/Upstream/3576661; hsa-mir-103a-1/Downstream/8889103;
Nearest TSS
ENST00000502646/Upstream/679135; ENST00000504296/Downstream/681769;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/867135, chr5-CpG: 32/Downstream/678853
Upstream sequence
ACTTTAAAGCCTAAGCATTGTATAATATTAAATAAGAGGAGGGGATGGGAGTGAAATGAGAATGGTATGAACAGAGGGAAATGAGAACACACCCAGAAAA
Downstream sequence
gccatcctagagggtataaagtagtatctcactgtggttttaatatgaaattccctggggctaaGATTATTATTTTTAAatttctgttaattttttatat
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate