ZNF318 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10014642
Fusion event
HBV-ZNF318 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1178
Orient
+
Integrated sequence
CTAAGCAGGCTTTCACTTTCTCGCCAACTTACAAGGCCTTTCTGTGTAAACAATATCTGCACCTTTACCCCGTTGCCCGGCAACGGTCAGGTCTCTGCCA| |AGTGTTTGCTGACGCAACCCCCACTGGATGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAA
Host Sequence
Chromosome
chr6
Cytoband
p21.1
Reference genome
End
43307993/43340255 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-10398/Upstream/1606645; hsa-mir-10524/Downstream/94287;
Upstream sequence
gagtggatcccgagggacaatagataataAATGGCTCAACCATCAGGTCagtcatgggcacctccatgaaaaacacgtccctgaaatcctgagagatttc
Downstream sequence
CAGCTTTTTCAGGGGAGTTCCTACCCTCAGAGAGTTGGTCTTCTAATTTCTCAGAGACCTTGTCATCCTCCTTTACTTCTTTCACAGCCTTTGCCTTTTT
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate