Basic Information
VIS ID
TVIS10014647
Fusion event
HBV-LOC100132484 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
AP011098.1
Start
2132
Orient
-
Integrated sequence
CCGGAACATTGTTCACCTCACCATACAGCACTCAGGCAAGCTATTCTGTGTTGGGGTGAGTTGATGAATCTGGCCACCTGGGTGGGAAGTAATTTGGAAG| |ACCCAGCATCCAGGGAATTAGTAGTCAGCTATGTCAATGTTAATATGGGCCTAAAAATCAGACAACTATTGTGGTTTCACATTTCCTGTCTTACTTTTGG
Host Sequence
Chromosome
chr3
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
162048405/162330617 (Hg38)
End
162048405/162330617 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC100132484
Nearest miRNA
hsa-let-7g/Upstream/1925792; hsa-mir-1224/Downstream/1840854;
Nearest TSS
ENST00000440867/Upstream/508709; ENST00000490357/Downstream/695779;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/957756, chr3-CpG: 20/Downstream/1673645
Upstream sequence
ATCTTTTGCAGATGCAACAATAAATTTAAACTTCCTGCATACAATTTTAGGGTGGCATTTTTCTTTTTCTCCTAATATTTCCAGAATCTGTCACTTTGGG
Downstream sequence
ggcagggtggtgcatacctatagttccagcagcttgggaggctgaggctcaagaatcacttgaacccagggacggaggttgcagtgagctgagatcatgc
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate