VISDB Viral Integration Site DataBase

VIS ID

TVIS10014655

Fusion event

HBV-CERS4 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1613

Orient

+

Integrated sequence

CGACCACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAG| |ACCACCGTGAACGCCCACCAGGTCTTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCGTACTTCAAAG

Chromosome

chr19

Cytoband

p13.2

Reference genome

Start

End

8315414/8250530 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-9-5p ; hsa-mir-3692-3p ; hsa-mir-192-3p ; hsa-mir-502-5p ; hsa-mir-5189-3p ; hsa-mir-1915-5p ; hsa-mir-6841-3p ; hsa-mir-500b-5p ; hsa-mir-362-5p ; hsa-mir-129-5p ; hsa-mir-8055 ; hsa-mir-4753-3p ; hsa-mir-4313 ; hsa-mir-130b-5p ; hsa-mir-4708-5p ; hsa-mir-6088 ; hsa-mir-4770 ; hsa-mir-143-3p ; hsa-mir-498 ; hsa-mir-4279 ; hsa-mir-3118 ; hsa-mir-134-5p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-1273f ; hsa-mir-5089-5p ; hsa-mir-4666a-5p ; hsa-mir-6778-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-6747-3p ; hsa-mir-4740-3p ; hsa-mir-6879-3p ; hsa-mir-153-5p ; hsa-mir-4704-3p ; hsa-mir-500b-3p ; hsa-mir-660-5p ; hsa-mir-335-3p ; hsa-mir-630 ; hsa-mir-4999-5p ; hsa-mir-4718 ; hsa-mir-1537-5p ; hsa-mir-1909-5p ; hsa-mir-4742-3p ; hsa-mir-4501 ; hsa-mir-512-3p ; hsa-mir-1267 ; hsa-mir-1273h-5p ; hsa-mir-1289 ; hsa-mir-149-5p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-2467-3p ; hsa-mir-3064-5p ; hsa-mir-30b-3p ; hsa-mir-3192-5p ; hsa-mir-3198 ; hsa-mir-34b-3p ; hsa-mir-3612 ; hsa-mir-3614-5p ; hsa-mir-367-5p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-4257 ; hsa-mir-4294 ; hsa-mir-4309 ; hsa-mir-4423-5p ; hsa-mir-4534 ; hsa-mir-4722-5p ; hsa-mir-4768-3p ; hsa-mir-4794 ; hsa-mir-490-3p ; hsa-mir-6500-3p ; hsa-mir-6501-5p ; hsa-mir-6504-5p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6514-5p ; hsa-mir-664a-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6808-5p ; hsa-mir-6822-3p ; hsa-mir-6893-5p ; hsa-mir-744-3p ; hsa-mir-760 ; hsa-mir-7851-3p ; hsa-mir-8057 ; hsa-mir-8082 ; hsa-mir-940

Nearest miRNA

hsa-mir-1227/Upstream/633025; hsa-let-7e/Downstream/138760;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/40369, chr19-CpG: 69/Downstream/57183

Upstream sequence

GGTATTACTGTCTCTGTTTttttgttttgttttgttttgtttttgagatggagtcttgttctgtcacccaggctgcagtgcagtggcacgatctcggctc

Downstream sequence

actgcaacctccgcctcccaggttcaagtgattctcctgcctcagactcctgagtagctgggattacaggcatgtgccaccacgcccagctcatttttgt