RBM33 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10014666
Fusion event
HBV-RBM33 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
2021
Orient
+
Integrated sequence
GAATTTGGAGCTTCTGTGGAGTTACTCTCTTTTTTGCCTTCTGACTTCTTTCCTTCTATTCGAGATCTCCTCGACACCGCCTCTGCTCTGTATCGGGAGG| |CCTTAGAGTCTCCGGAACATTGTTCACCTCACCATACAGCACTCAGGCAAGCTATTCTGTGTTGGGGTGAGTTGATGAATCTGGCCACCTGGGTGGGAAG
Host Sequence
Chromosome
chr7
Cytoband
q36.3
Reference genome
End
155443949/155651255 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-10399/Upstream/4217616; hsa-mir-153-2/Downstream/1923081;
Upstream sequence
TCACTCCCTGTTGGCTCATGGAGCCCAGAGGTAGAGCCCCAGGAAGCCACACCAGGGGACCTAAGTTGTCACCAGATGAAATCTATCTGACATCCTAGGA
Downstream sequence
cacaacttgattggtggttttgttgggtccagaattttagatttgagtttatttttgtaagatttttggcggtattgttgtgttttctggcatccagatc
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate