Basic Information
VIS ID
TVIS10014668
Fusion event
HBV-LINC01605 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
AP011098.1
Start
1025
Orient
+
Integrated sequence
TACGGAAACTCAAGCAATGTTTTCGAAAACTGCCTGTAAATAGACCTATTGATTGGAAAGTATGTCAAAGAATTGTGGGTCTTTTGGGCTTTGCTGCCCC| |TTTTACACAATGTGGCTATCCTGCCTTGATGCCTTTATATGCATGTATACAATCTAAGCAGGCTTTCACTTTCTCGCCAACTTACAAGGCCTTTCTGTGT
Host Sequence
Chromosome
chr8
Cytoband
p11.23
Reference genome
GRCh37/hg19
Start
37337657/37480139 (Hg38)
End
37337657/37480139 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC01605
Nearest miRNA
hsa-mir-124-1/Upstream/7522791; hsa-mir-10400/Downstream/3790909;
Nearest TSS
ENST00000518652/Upstream/50; ENST00000522643/Downstream/13695;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/2243546, chr8-CpG: 351/Downstream/214287
Upstream sequence
ACCTGGAGGTCTAAATTGCTCCTGAGATGAATGCTGTGCACAGCTCCTCACCTGCAGAGATATTTGACAGGCAGCATCCCAGCGCCTTCCTCCCCTGCAC
Downstream sequence
GTTCCCTGCCCCTTCAGCTGGATGGAGACATTTGGAGGGATGCCCTGCCCTAGCCCACCTCACTCTCACCATGTCAACAGGTGAGGTCTTAATCCCTGTA
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate