VISDB Viral Integration Site DataBase

VIS ID

TVIS10014669

Fusion event

HBV-EFCAB1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

2745

Orient

-

Integrated sequence

AGGTTCTATCCTAACCTTACCAAATATTTGCCCTTGGATAAAGGCATTAAACCTTATTATCCTGAACATGCAGTTAATCATTACTTCAAAACTAGGCATT| |ATTTACATACTCTGTGGAAGGCTGGCATTCTATATAAGAGAGAAACTACACGCAGCGCTTCATTTTGTGGGTCACCATATTCTTGGGAACAAGAGCTACA

Chromosome

chr8

Cytoband

q11.21

Reference genome

Start

End

49642751/48730192 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-328-3p ; hsa-mir-4639-5p ; hsa-mir-4745-3p ; hsa-mir-1538 ; hsa-mir-4749-3p ; hsa-mir-6769a-3p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-187-5p ; hsa-mir-494-3p

Nearest miRNA

hsa-mir-124-1/Upstream/5833917; hsa-mir-10400/Downstream/12984596;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/173757, chr8-CpG: 37/Downstream/4951

Upstream sequence

GCCCAGCCCTGCGGTCCCCTCAGTCAACTCTGTTTCGGAGACATAACGATTTGGATTGCTAACAAGTCAAGAAATGTTCAAGTCCTTGGAtgtagggaaa

Downstream sequence

CACTTGAATCAATATTCTCTAGTTTTATGGTTACAATTCAAGTAATGAAATCTGTCAAATGCTTAACATATAAATGTATATGTACATAATTAGCATATGT