Basic Information
VIS ID
TVIS10014670
Fusion event
HBV-LOC100420587 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
AP011098.1
Start
1830
Orient
-
Integrated sequence
TGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCT| |CTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTTGGA
Host Sequence
Chromosome
chr19
Cytoband
q12
Reference genome
GRCh37/hg19
Start
29087653/28596746 (Hg38)
End
29087653/28596746 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC100420587
Nearest miRNA
hsa-mir-10395/Upstream/8197392; hsa-let-7e/Downstream/6525954;
Nearest TSS
ENST00000633603/Upstream/61469; ENST00000587961/Downstream/9942;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/686821, chr19-CpG: 67/Downstream/130348
Upstream sequence
GGTCTCCCAGCCCTGTGCACATTTTGCCACAAGCCGCTGTGAGCGCATAAATCCTAGCTCTGTCAACAGTAATGAGGCCCAGAGAGCAGGCACCTGCTGG
Downstream sequence
GGCCCTGAAATTTTTTCTGAGGAAAATGTACATAATTAAGGAATTGTGAGCACTCACCTCTGATTTATTATTAAAACAACACACCTAGGGCCACATTTGC
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate