Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10014682
Fusion event
HBV-MECOM integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
193
Orient
-
Integrated sequence
TCCGACTACTGCCTCACCCATATCGTCAATCTTCTCGAGGACTGGGGACCCTGCACAGAACATGGAGAGCACAACATCAGGATTCCTAGGACCCCTGCTC| |GTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCACAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCACCCA
Host Sequence
Chromosome
chr3
Cytoband
q26.2
Reference genome
End
169023909/169306121 (Hg38)
Orient
-
Location type
Intronic
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-let-7g/Upstream/754172; hsa-mir-1224/Downstream/1116982;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/156496, chr3-CpG: 122/Downstream/355528
Nearest cancer related gene
MECOM(OG, No orient, 0)
Upstream sequence
cTATATTTTTATCAGCTTTATAAACTAAAAAGGAAAAATCTAAAATCATTCAACCAGTAGCTGATGTGCATATCTTTTGCAGATGCAACAATAAATTTAA
Downstream sequence
TCATGCACAGGTGTTTAAAGTAAAGCATTATCGAGGTAATAAAAAATTCATGATTATCTTCCTTTGTATAATTATAGCTGAATATTATGCAATAAGTTCA
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.