ANKRD17 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10014685
Fusion event
HBV-ANKRD17 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
AP011098.1
Start
17
Orient
-
Integrated sequence
CTCCACAACATTCCACC| |AAGCTCTGCTAGATCCCAGAGTGAGGGGCCTATATTTTCCTGCTGGTGGCTCCAGTTCCGGAACAGTAAACCCTGTTCCGACTACTGCCTCACCCATATC
Host Sequence
Chromosome
chr4
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
74108318/73242601 (Hg38)
End
74108318/73242601 (Hg38)
Orient
+
Location type
Intronic
Target gene
ANKRD17
miRNAs that regulate target gene
hsa-mir-23b-3p ; hsa-mir-1-3p ; hsa-mir-16-5p ; hsa-mir-424-5p ; hsa-mir-186-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-549a ; hsa-mir-4699-3p ; hsa-mir-582-5p ; hsa-mir-101-3p ; hsa-mir-885-5p ; hsa-mir-6504-3p
Nearest miRNA
hsa-mir-12113/Upstream/6965673; hsa-mir-1243/Downstream/3330967;
Nearest TSS
ENST00000502981/Upstream/19487; ENST00000502790/Downstream/15721;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/172668, chr4-CpG: 62/Downstream/16087
Upstream sequence
ATTTTATTAACTTAtttatttatttttgagaccgaatctctgtcgcccaggctggagcacagtggcacgatctcagctcactgcaacctccgcctcccgg
Downstream sequence
agcatgtctgacatgttaaatgaacaatatccaaaactcttgagaaagaagctcaatgagtgagaactgccttctaagataccaaACCATGCTAACATAt
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate