VISDB Viral Integration Site DataBase

VIS ID

TVIS10014688

Fusion event

HBV-HEATR6 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

2585

Orient

-

Integrated sequence

TGGGCTTTATTCTTCTACTGTACCTGTCTTTAATCCTGAGTGGCAAACTCCCTCCTTTCCTAACATTCATTTACAGGAGGACATTATTAATAGATGTCAA| |CAATATGTGGGCCCTCTTACAGTTAATGAAAAAAGGAGATTAAAATTAATTATGCCTGCTAGGTTCTATCCTAACCTTACCAAATATTTGCCCTTGGATA

Chromosome

chr17

Cytoband

q23.1

Reference genome

Start

End

58147104/60069743 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-615-3p ; hsa-mir-92a-3p

Nearest miRNA

hsa-mir-10226/Upstream/26638; hsa-mir-1250/Downstream/2874472;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/26676, chr17-CpG: 38/Downstream/8906

Upstream sequence

TAGAAAACACACACAACAATCTATTAAAAATAAGCCACAACTTAAATCTAAATAAACATAAATGTACCAAAGTTGGTCGAGAAGCACTGGATTCTGATTG

Downstream sequence

CTGTGGTTTGATAGGTGTTCGCCCATCATACTGAGGAAGCGGAGTTGGGTATAACACCGTGGGCATCTCTATGTTTAGTCCAGGGAGTCCGTGAAACATG