VISDB Viral Integration Site DataBase

VIS ID

TVIS10014692

Fusion event

HBV-SFMBT2 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

2016

Orient

-

Integrated sequence

ATAAAGAATTTGGAGCTTCTGTGGAGTTACTCTCTTTTTTGCCTTCTGACTTCTTTCCTTCTATTCGAGATCTCCTCGACACCGCCTCTGCTCTGTATCG| |GGAGGCCTTAGAGTCTCCGGAACATTGTTCACCTCACCATACAGCACTCAGGCAAGCTATTCTGTGTTGGGGTGAGTTGATGAATCTGGCCACCTGGGTG

Chromosome

chr10

Cytoband

p14

Reference genome

Start

End

7312349/7270387 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-4743-3p ; hsa-mir-6888-3p ; hsa-mir-539-5p ; hsa-mir-7843-3p ; hsa-mir-4786-3p ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-5197-3p ; hsa-mir-7161-5p ; hsa-mir-548u ; hsa-mir-1178-3p ; hsa-mir-3972 ; hsa-mir-3194-5p ; hsa-mir-1202 ; hsa-mir-4722-5p ; hsa-mir-4524a-3p ; hsa-mir-4530 ; hsa-mir-4768-3p ; hsa-mir-4302 ; hsa-mir-761 ; hsa-mir-3619-5p ; hsa-mir-214-3p ; hsa-mir-648 ; hsa-mir-6165 ; hsa-mir-6868-3p ; hsa-mir-4263 ; hsa-mir-6499-3p ; hsa-mir-423-3p ; hsa-mir-631 ; hsa-mir-3661 ; hsa-mir-17-3p ; hsa-mir-598-5p ; hsa-mir-1248 ; hsa-mir-6893-3p ; hsa-mir-1237-3p ; hsa-mir-8079 ; hsa-mir-370-3p ; hsa-mir-1245a ; hsa-mir-4652-3p ; hsa-mir-616-3p ; hsa-mir-215-3p ; hsa-mir-6773-3p ; hsa-mir-4282 ; hsa-mir-1247-3p ; hsa-mir-1827 ; hsa-mir-185-5p ; hsa-mir-34b-3p ; hsa-mir-3614-5p ; hsa-mir-4306 ; hsa-mir-4644 ; hsa-mir-4649-3p ; hsa-mir-6500-3p ; hsa-mir-665 ; hsa-mir-6731-5p ; hsa-mir-6746-5p ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-7160-5p ; hsa-mir-8085 ; hsa-mir-940

Nearest miRNA

hsa-mir-3155a/Upstream/1118110; hsa-mir-107/Downstream/4860373;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/98246, chr10-CpG: 21/Downstream/97209

Upstream sequence

cttcaggggagtgtggtcctgccgacaccctgatttcacacactagtctccagaagcatgagagaacaaatttctgtcattctaagtcatccagtccatg

Downstream sequence

ggaatttgtgacagtagcctttgcaaactaaGAAAATGATGTTCTCACACCCTCCAAATTAAACGTGTAGATTCTCACTCATTACAAAATATAGTTAAGA