Basic Information
VIS ID
TVIS10014693
Fusion event
HBV-chr6 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
AP011098.1
Start
3212
Orient
+
Integrated sequence
CAGCAGCGCCTCCTCCTGCCTCCACCAATCGGCAGTCAGGAAGACAGCCTACTCCCATCTCTCCACCTCTAAGAGACAGTCATCCTCAGGCCATGCAGTG| |GAA
Host Sequence
Chromosome
chr6
Cytoband
q27
Reference genome
GRCh37/hg19
Start
164970001/164548968 (Hg38)
End
164970001/164548968 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-10398/Upstream/5784215; hsa-mir-1913/Downstream/1960386;
Nearest TSS
ENST00000381078/Upstream/200324; ENST00000456118/Downstream/278782;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/211621, chr6-CpG: 31/Downstream/785306
Upstream sequence
aattttatcttttgcaaatacagatgtacaaaaaggagatctcttcccttaggaaatatcaacatctttatgtacatgtcagagtcatggtgtgatgacg
Downstream sequence
CAAACAAACAAAAAAAAgggatacatgtgcagaacgtgcagatttgttacataggtatacatgtgccatagtggtttgctgcacctactgacccatcctc
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate