Basic Information
VIS ID
TVIS10014694
Fusion event
HBV-FLJ39630 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
AP011098.1
Start
2472
Orient
-
Integrated sequence
GAAGAACTCCCTCGCCTCGCAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATCTCAATGTTAGTATCCCTTGGACTCATAAGG| |TGGGAAACTTTACTGGGCTTTATTCTTCTACTGTACCTGTCTTTAATCCTGAGTGGCAAACTCCCTCCTTTCCTAACATTCATTTACAGGAGGACATTAT
Host Sequence
Chromosome
chr8
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
63280963/62368404 (Hg38)
End
63280963/62368404 (Hg38)
Orient
+
Location type
Intronic
Target gene
FLJ39630
Nearest miRNA
hsa-mir-124-1/Upstream/653545; hsa-mir-10400/Downstream/2010745;
Nearest TSS
ENST00000518652/Upstream/119441; ENST00000622794/Downstream/105865;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/118899, chr8-CpG: 91/Downstream/670159
Upstream sequence
taagggggaactactgTATATACTCCTCTCTTGCAACGCACTAAGACAGAGCGGGTATAAAATGTGAGCACTTGGGCCAGCTTGCTGTGGACAATTTCAC
Downstream sequence
gtcaactgatttttgacaaatgtgttgagaacacacacagaaaggatcatctttttaataaatggtgttggaacacctcaatatccacatgcaCgtgaaa
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate