Fusion event
HBV-LOC105378887 integration
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Integrated sequence
ATACACCTCCTTCCCATGGCTGCTCGGGTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCGCTGAATCCCGCGGACGAC| |CCGTCTCGGGGCCGTTTGGGGCTCTACCGTCCCCTTCTTCATCTGCCGTTCCGGCCGACCACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTGTGC
End
106996401/106453779 (Hg38)
Nearest miRNA
hsa-mir-101-1/Upstream/6172471; hsa-mir-11399/Downstream/1443444;
Upstream sequence
gaacTTTTTCTAATATGAATTTCTCTATAATTTGCAgttcagtcagagaagtagaaccactgagttatataataaagggctaattatagggaatccacca
Downstream sequence
tatgcaattgtgagtactatagaaagttgttgactgtgataagagaatgaagttactgtagatcaggaaggccactagtcaagataaaacgccagccata
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.