Basic Information
VIS ID
TVIS10014698
Fusion event
HBV-LOC105378887 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1458
Orient
-
Integrated sequence
ATACACCTCCTTCCCATGGCTGCTCGGGTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCGCTGAATCCCGCGGACGAC| |CCGTCTCGGGGCCGTTTGGGGCTCTACCGTCCCCTTCTTCATCTGCCGTTCCGGCCGACCACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTGTGC
Host Sequence
Chromosome
chr1
Cytoband
p21.1
Reference genome
End
106996401/106453779 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-101-1/Upstream/6172471; hsa-mir-11399/Downstream/1443444;
Upstream sequence
gaacTTTTTCTAATATGAATTTCTCTATAATTTGCAgttcagtcagagaagtagaaccactgagttatataataaagggctaattatagggaatccacca
Downstream sequence
tatgcaattgtgagtactatagaaagttgttgactgtgataagagaatgaagttactgtagatcaggaaggccactagtcaagataaaacgccagccata
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate