MARK1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10014700
Fusion event
HBV-MARK1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
2445
Orient
-
Integrated sequence
TTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATCTCA| |ATGTTAGTATCCCTTGGACTCATAAGGTGGGAAACTTTACTGGGCTTTATTCTTCTACTGTACCTGTCTTTAATCCTGAGTGGCAAACTCCCTCCTTTCC
Host Sequence
Chromosome
chr1
Cytoband
q41
Reference genome
End
220821613/220648271 (Hg38)
Orient
-
Location type
Intronic
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-101-1/Upstream/447652; hsa-mir-1182/Downstream/3608769;
Upstream sequence
TAAACTTATGGTATAATTATATAAAATATCACTTTACTGTGAAAGAACCCCCAAAAAGTTGTTTACATGGTTGGTTTCCACATTGGGGAAGTTACCAAAC
Downstream sequence
TACAGTTTAAGAGTCTGCAAGGGTAGTTTTCCACCTAGTTCCCAAATCCTCAGCAGAAAGAACCTTACCTGCTTAGTGATAACTAGATCTTTTTTATTTG
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate