VISDB Viral Integration Site DataBase

VIS ID

TVIS10014704

Fusion event

HBV-KIF26B integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1774

Orient

-

Integrated sequence

CAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACT| |AGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCA

Chromosome

chr1

Cytoband

q44

Reference genome

Start

End

245547453/245384151 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-4530 ; hsa-mir-5685 ; hsa-mir-4690-3p ; hsa-mir-634 ; hsa-mir-629-3p ; hsa-mir-3944-3p ; hsa-mir-627-3p ; hsa-mir-6795-3p ; hsa-mir-4279 ; hsa-mir-501-5p ; hsa-mir-20a-5p

Nearest miRNA

hsa-mir-101-1/Upstream/2037896; hsa-mir-3124/Downstream/1817816;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/48235, chr1-CpG: 17/Downstream/193540

Upstream sequence

aggttttctacctGCACAGAGAAAAACTGAAGTCGCACGCTGCTCTTGGTTTTCTCAGCCTGGAGCAGATGCCTTTGAGCAGCTACCACTTCCCGTTCCC

Downstream sequence

CTGACAGTGTGCTCCGGCTTTACGAGGCTGTTTTTCTCTCCACAGTCACCAAGTCCACTGTCTCTCCACAGTCACCAAGTCCACTGTCTCTCTCCACTTT