Basic Information
VIS ID
TVIS10014707
Fusion event
HBV-LOC105369905 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
AP011098.1
Start
368
Orient
+
Integrated sequence
CTCAATTTTCTAGGGGGAGCACCCACGTGTCCTGGCCAAAATTCGCAGTCCCCAACCTCCAATCACTCACCAACCTCTTGTCCTCCAATTTGTCCTGGCT| |ATCGCTGGATGTGTCTGCGGCGTTTTATCATATTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTACCAAGGTATGTTGCC
Host Sequence
Chromosome
chr12
Cytoband
q22
Reference genome
GRCh37/hg19
Start
93019067/92625291 (Hg38)
End
93019067/92625291 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105369905
Nearest miRNA
hsa-let-7i/Upstream/5880142; hsa-mir-1178/Downstream/1936498;
Nearest TSS
ENST00000382841/Upstream/158840; ENST00000397833/Downstream/77552;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/478734, chr12-CpG: 133/Downstream/303275
Upstream sequence
CTACTTTGAAGAATTTGGAGAATTAAGCAAAACATACGAagttctcaattttcctacataatgcattgctgaaaattttcaaattggttaaacttgaaca
Downstream sequence
tcacgattatgtattcagtaaatgggactccatgttcagtgtgctataaaaaaattcctaatttcatccaattctaaatataatctttgaccattgattt
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate