Basic Information
VIS ID
TVIS10014711
Fusion event
HBV-LINC01470 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
AP011098.1
Start
1752
Orient
+
Integrated sequence
CATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGA| |TTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCA
Host Sequence
Chromosome
chr5
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
152215061/152835501 (Hg38)
End
152215061/152835501 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC01470
Nearest miRNA
hsa-mir-10397/Upstream/1313353; hsa-mir-103a-1/Downstream/1511605;
Nearest TSS
ENST00000502646/Upstream/145972; ENST00000520353/Downstream/136282;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/910238, chr5-CpG: 50/Downstream/1203122
Upstream sequence
attaaaaagtcaaaaaaacaaacaaacagatgatggtgaggttgtagaaaaaaagagaatgctcaaacactgctggtgggaatataaactagtcagctac
Downstream sequence
GATACATTGAAGGTTGAAAAGCTGTGAAATCTTTACAAATGCATTGCTCACATGGTTTAGTCTATGCTCCCAAGTAACTTTCAAGGAGATACAGTCCAAA
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate