Basic Information
VIS ID
TVIS10014712
Fusion event
HBV-chr12 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1761
Orient
+
Integrated sequence
ACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAA| |AGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACT
Host Sequence
Chromosome
chr12
Cytoband
q15
Reference genome
End
69723801/69330021 (Hg38)
Orient
-
Nearest miRNA
hsa-let-7i/Upstream/56803; hsa-mir-1178/Downstream/254701;
Upstream sequence
ctgggcaccgtcagataatttgtttagccaatctctgtataagttgaagttgtttaagatgagtttctctaattttagtagaaaaattgatgcaattggg
Downstream sequence
tggcttggtctagcagtgatgttacaacctgaagagctgcttgatcattgccataagccaatgggccaggcagagagctgtgggctcgaatgtgtgtaat
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate