Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10014716
Fusion event
HBV-TEKT3 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1751
Orient
+
Integrated sequence
ACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAG| |ATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTC
Host Sequence
Chromosome
chr17
Cytoband
p12
Reference genome
Start
End
15243475/15340158 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-1253/Upstream/88462; hsa-mir-10226/Downstream/941856;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/76969, chr17-CpG: 36/Downstream/1230
Upstream sequence
tacctagagaaatgcaaatatgtttacaattagaatgtacaagaattcctttctagtatttttaaagggagcaaactaaaagtccatcaacaggaggatg
Downstream sequence
catacataatatgtggtaaattcatgcaagaatcaccacacaacagttcaaatgaatgacctgcaacacgtacagcataaccattctatcaacttaaaaa
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.