DOK5 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10014718
Fusion event
HBV-DOK5 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
AP011098.1
Start
2376
Orient
-
Integrated sequence
TTCGCACTCCTCCCGCTTACAGACCACCAAATGCCCCTATCTTATCAACACTTCCGGAAACTACTGTTGTTAGACGACGAGGCAGGTCCCCTAGAAGAAG| |AACTCCCTCGCCTCGCAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATCTCAATGTTAGTATCCCTTGGACTCATAAGGTGGG
Host Sequence
Chromosome
chr20
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
53170212/54553673 (Hg38)
End
53170212/54553673 (Hg38)
Orient
-
Location type
Intronic
Target gene
DOK5
Nearest miRNA
hsa-mir-103a-2/Upstream/485188; hsa-mir-1-1/Downstream/2767829;
Nearest TSS
ENST00000382410/Upstream/77955; ENST00000484860/Downstream/1260;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/77219, chr20-CpG: 165/Downstream/1449874
Upstream sequence
CATTTGCCATCAGTAACTATTATTATTAAATTATACTCATTTgctgggcgcggtggctcacgtctgtaagcccagcactttgggaggccgaggcgggtgg
Downstream sequence
atcatgaggtgaggagtttgagtccagcctgaccaacatggtgaaacccggtctctactaaaaaaatacaaaaattagctgggcctagttgtgcttgcct
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate