Basic Information
VIS ID
TVIS10014719
Fusion event
HBV-chr13 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
AF043594.1
Start
1837
Orient
-
Integrated sequence
AGTTGGGGGAGGAGACTAGATTAATGATCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTA| |ATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGACATGGACATTGACCCTTATAAAGAATTTGGAGCTACTG
Host Sequence
Chromosome
chr13
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
97585857/96933603 (Hg38)
End
97585857/96933603 (Hg38)
Orient
+
Fragile sites / regions
FRA13D
Nearest miRNA
hsa-mir-1297/Upstream/506311; hsa-mir-1267/Downstream/1274921;
Nearest TSS
ENST00000623511/Upstream/101115; ENST00000606096/Downstream/14415;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/841695, chr13-CpG: 35/Downstream/60537
Nearby gene
LINC00359(+7678) ;
Upstream sequence
aaggcatggccacagcaagtgatagaaaaatcaggagagagtgctatcgcagaagccaatgagaaagagtgtttcaagagggaatgatgtccacctgcat
Downstream sequence
caaatactgctcagaaatcaggtaatacaaaatattttgccttattttgcaaagtgacggtcattgggaacttcactgagcagttttagtggaacactag
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate