VISDB Viral Integration Site DataBase

VIS ID

TVIS10014733

Fusion event

HBV-ZMYM4 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1743

Orient

+

Integrated sequence

AAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAGGACTGGGAGGAGTTGG| |GGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATC

Chromosome

chr1

Cytoband

p34.3

Reference genome

Start

End

35838747/35373146 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-3149 ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-6789-3p ; hsa-mir-4707-3p ; hsa-mir-4258 ; hsa-mir-4438 ; hsa-mir-34a-5p ; hsa-mir-34c-5p ; hsa-mir-449a ; hsa-mir-449b-5p ; hsa-mir-4698 ; hsa-mir-4705 ; hsa-mir-548au-3p ; hsa-mir-551b-5p ; hsa-mir-7150 ; hsa-mir-8063

Nearest miRNA

hsa-mir-12136/Upstream/703452; hsa-mir-101-1/Downstream/1788417;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/103892, chr1-CpG: 95/Downstream/183933

Upstream sequence

tactcagatggctgaggcacaagaaacacttgaccctgggaggtagaggttgcagtgagccaagattgcaccaatgcactccagcctggatgacagagtg

Downstream sequence

agactctatctcaaaaaaaaagaaagaaaaTTATGTTGTACACATAGTAAATACATATAATTTATGTCAGtataaataaatatatatatatgcatatata