VISDB Viral Integration Site DataBase

VIS ID

TVIS10014738

Fusion event

HBV-chr5 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

2558

Orient

-

Integrated sequence

TTGGACTCATAAGGTGGGAAACTTTACTGGGCTTTATTCTTCTACTGTACCTGTCTTTAATCCTGAGTGGCAAACTCCCTCCTTTCCTAACATTCATTTA| |CAGGAGGACATTATTAATAGATGTCAACAATATGTGGGCCCTCTTACAGTTAATGAAAAAAGGAGATTAAAATTAATTATGCCTGCTAGGTTCTATCCTA

Chromosome

chr5

Cytoband

p15.33

Reference genome

Start

End

673522/673407 (Hg38)

Orient

+

Location type

Intronic

Target gene

LOC100132605 ; TPPP

miRNAs that regulate target gene

hsa-mir-34a-5p ; hsa-mir-26b-5p ; hsa-mir-190a-3p ; hsa-mir-1277-5p ; hsa-mir-5011-5p ; hsa-mir-5589-3p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-548c-3p ; hsa-mir-410-3p ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-623 ; hsa-mir-6832-3p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-377-3p ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-578 ; hsa-mir-526b-5p ; hsa-mir-4635 ; hsa-mir-149-3p ; hsa-mir-215-3p ; hsa-mir-2467-3p ; hsa-mir-2467-5p ; hsa-mir-3186-3p ; hsa-mir-4728-5p ; hsa-mir-6773-3p ; hsa-mir-6781-5p ; hsa-mir-6785-5p ; hsa-mir-6883-5p ; hsa-mir-7112-5p ; hsa-mir-760

Nearest miRNA

hsa-mir-10397/Downstream/389489;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/4933, chr5-CpG: 26/Downstream/4291

Upstream sequence

CCTACATAATAACCAGTCTGGTCATACCGATAGACTTTATACAATGTCTGCTGTATAAACAGTGTGTTCAGTCTGTGTATATCAAATATCTCAGACACAA

Downstream sequence

GGGGGCAGCCCTGGGGGGCCAGGGTCACAGGGGTCCATGGCTGCAGGTGAATGGGGAGGGGGGGAGGTCAGAATCCCTTGGCCTCCCCTCAGGCCGGAGT