VISDB Viral Integration Site DataBase

VIS ID

TVIS10014739

Fusion event

HBV-TPPP integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1707

Orient

+

Integrated sequence

ATGGAGACCACCGTGAACGCCCACCAGGTCTTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACT| |TCAAAGACTGTTTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACC

Chromosome

chr5

Cytoband

p15.33

Reference genome

Start

End

677082/676967 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-34a-5p ; hsa-mir-26b-5p ; hsa-mir-190a-3p ; hsa-mir-1277-5p ; hsa-mir-5011-5p ; hsa-mir-5589-3p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-548c-3p ; hsa-mir-410-3p ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-623 ; hsa-mir-6832-3p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-377-3p ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-578 ; hsa-mir-526b-5p ; hsa-mir-4635 ; hsa-mir-149-3p ; hsa-mir-215-3p ; hsa-mir-2467-3p ; hsa-mir-2467-5p ; hsa-mir-3186-3p ; hsa-mir-4728-5p ; hsa-mir-6773-3p ; hsa-mir-6781-5p ; hsa-mir-6785-5p ; hsa-mir-6883-5p ; hsa-mir-7112-5p ; hsa-mir-760

Nearest miRNA

hsa-mir-10397/Downstream/385929;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/8493, chr5-CpG: 26/Downstream/731

Upstream sequence

ttatataatggcaaattgccctcagaaaagttcacagtgatttattctatcacagttagtgtgtTCATAAAACACTGGCAGCTCTATCAGTATATATTTG

Downstream sequence

gaaacgcacacacgacgcagaaacgcgcacacgtgcacacgcagaaacgcgcacacgtgcacacacgacgcggaaacgcacacacgtgcacacagaaacg