hsa-mir-422a _LIHC.png
TERT _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10014740
Fusion event
HBV-TERT integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
2021
Orient
-
Integrated sequence
GAATTTGGAGCTTCTGTGGAGTTACTCTCTTTTTTGCCTTCTGACTTCTTTCCTTCTATTCGAGATCTCCTCGACACCGCCTCTGCTCTGTATCGGGAGG| |CCTTAGAGTCTCCGGAACATTGTTCACCTCACCATACAGCACTCAGGCAAGCTATTCTGTGTTGGGGTGAGTTGATGAATCTGGCCACCTGGGTGGGAAG
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
End
1294807/1294692 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-4635/Upstream/231718; hsa-mir-10397/Downstream/14618;
Nearest CpG islands
chr5-CpG: 485/Target, None/Upstream, None/Downstream
Nearest cancer related gene
TERT(OG, No orient, 0)
Upstream sequence
TAATATGAAGGTGTTAGTATGATTTTTTTCATACAAGCAGTTTAATAGTGGGACTGGCATTAAGATTCTGTGGCATAGCAATAGAATCTTTTTGGATTTA
Downstream sequence
TGCGCTGCTCTCCGCATGTCGCTGGTTCCCCCCGGCCGCCCTCAACCCCAGCCGGACGCCGACCCCGGGGAGGCCCACCTGGCGGAAGGAgggggcggcg
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate