hsa-mir-497-3p _LIHC.png
DPP6 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10014752
Fusion event
HBV-DPP6 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1102
Orient
+
Integrated sequence
CAATATCTGCACCTTTACCCCGTTGCCCGGCAACGGTCAGGTCTCTGCCAAGTGTTTGCTGACGCAACCCCCACTGGATGGGGCTTGGCCATTGGCCAAT| |CGGGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGG
Host Sequence
Chromosome
chr7
Cytoband
q36.2
Reference genome
End
154265737/154568652 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-10399/Upstream/3135013; hsa-mir-153-2/Downstream/3005684;
Upstream sequence
TATTAAATACGAGTTATGTGCTCAACTGTGAATttatatgaaaaggagattaggacacaacaggcatagaggaaagatcatgtgaagacacagggagaaa
Downstream sequence
TAAAGATCATTTTGCTAAAGATGAGTCTTCACCATGTGGAGCACTGGCTGTAAACAGGAACCTTGAAATAACCCTTTCTCACTGGGCAGCATCTGTCGGT
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate