Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10014755
Fusion event
HBV-CPA6 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1676
Orient
+
Integrated sequence
GTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAGGTCTTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCA| |GCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAG
Host Sequence
Chromosome
chr8
Cytoband
q13.2
Reference genome
Start
End
68545529/67633294 (Hg38)
Orient
+
Location type
Intronic
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-124-1/Upstream/3254037; hsa-mir-10400/Downstream/6915249;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/289479, chr8-CpG: 64/Downstream/318896
Upstream sequence
tagagatagggacccctttggttctgacggttctgtgtacacaatctttgtttcatgcacaaaattatttaaaatattgtataaaatgggccgggtgcag
Downstream sequence
gtaatacataatatatgtgaatttattcttataatttttattttttgtttgttgtaggttcttattgcccttttcttcctctttcttggattaatcaatt
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.