Basic Information
VIS ID
TVIS10014757
Fusion event
HBV-LINC02334 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
AP011098.1
Start
1488
Orient
-
Integrated sequence
TGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCGCTGAATCCCGCGGACGACCCGTCTCGGGGCCGTTTGGGGCTCTACCGT| |CCCCTTCTTCATCTGCCGTTCCGGCCGACCACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCG
Host Sequence
Chromosome
chr13
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
38591682/38017545 (Hg38)
End
38591682/38017545 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02334
Nearest miRNA
hsa-mir-2276/Upstream/13855041; hsa-mir-1267/Downstream/1646489;
Nearest TSS
ENST00000623511/Upstream/82980; ENST00000464423/Downstream/43903;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/147454, chr13-CpG: 32/Downstream/332275
Upstream sequence
tgaacattttttatatacctgttggccatttgtatgtcttcttttaagaaatgcctgttcatgttctttacccatttctgatgagataacttcttttttc
Downstream sequence
tgttgagttgttgggtccctttttattctgaatattagtcctttgttggatgaatagtttgcaaatattttctcccattcaacaggttgtctctccactc
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate