Basic Information
VIS ID
TVIS10014762
Fusion event
HBV-chr11 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
AB033550.1
Start
1232
Orient
+
Integrated sequence
ATCTGCACCTTTACCCCGTTGCCCGGCAACGGTCAGGTCTCTGCCAAGTGTTTGCTGACGCAACCCCCACTGGATGGGGCTTGGCCATAGGCCATCGGCG| |CATGCGCGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCAAAACTTATCGGGACT
Host Sequence
Chromosome
chr11
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
83120874/83409831 (Hg38)
End
83120874/83409831 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-10392/Upstream/1518995; hsa-let-7a-2/Downstream/2868502;
Nearest TSS
ENST00000527297/Upstream/123424; ENST00000531424/Downstream/52318;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/123338, chr11-CpG: 24/Downstream/2218468
Upstream sequence
ATGATTTTATGCCACACTGACAAACAGGTATTCATAGTGAAGTGCCTTAGGAAGGAGGCAATGAGAGCTATTTCTGGCTAAAGCACTGATTATGGACATG
Downstream sequence
GTTTTCCCATTACTGTGACAAATATCTGCTCATGCAGTTTGGGTGTGATGGTGAGAGAATAAACTTGATTCTCTCTCTTTCTTTCtttttttttttttaa
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate