Basic Information
VIS ID
TVIS10014769
Fusion event
HBV-chr13 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
AP011098.1
Start
2391
Orient
-
Integrated sequence
CTTACAGACCACCAAATGCCCCTATCTTATCAACACTTCCGGAAACTACTGTTGTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCG| |CAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATCTCAATGTTAGTATCCCTTGGACTCATAAGGTGGGAAACTTTACTGGGCT
Host Sequence
Chromosome
chr13
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
104161305/103508955 (Hg38)
End
104161305/103508955 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-1297/Upstream/1462951; hsa-mir-1267/Downstream/4022216;
Nearest TSS
ENST00000623511/Upstream/83755; ENST00000640578/Downstream/1956912;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/662542, chr13-CpG: 29/Downstream/2984105
Upstream sequence
ttcttttattttttatttatagtattgtaatttgttttttcttttttctcaaataatcttgctatgcttgtataaattttattattatttaaagaaccat
Downstream sequence
acttttgccttttaatattttttgattgaatatttttctatttcattgatttctaatcttatttttattGAGTAGTTTATACACCTAGTAATACCATACT
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate