Basic Information
VIS ID
TVIS10014772
Fusion event
HBV-chr13 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
2307
Orient
-
Integrated sequence
TTCACATTTCCTGTCTTACTTTTGGAAGAGAAACTGTTCTTGAGTATTTGGTGTCTTTTGGAGTGTGGATTCGCACTCCTCCCGCTTACAGACCACCAAA| |TGCCCCTATCTTATCAACACTTCCGGAAACTACTGTTGTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGGTCTCAA
Host Sequence
Chromosome
chr13
Cytoband
q33.1
Reference genome
End
104316887/103664537 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-1297/Upstream/1618533; hsa-mir-1267/Downstream/3866634;
Upstream sequence
CTACTTTCTAAAGTTTTTCACTTTTGAATTGAAGTTCTTGAGATGTtttctgggttttccttgaaggggtcaactcataagtctgaaaattaatcaaaca
Downstream sequence
tagctaagatgttcaaaatgttcttggcagagaaaataaatgttcacAATCTCATATTCTTTCCAACATTCATACTGGAGGTTTAGTGGATCTTTATCAA
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate