Basic Information
VIS ID
TVIS10014777
Fusion event
HBV-chr1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
AP011098.1
Start
2052
Orient
-
Integrated sequence
TTTTGCCTTCTGACTTCTTTCCTTCTATTCGAGATCTCCTCGACACCGCCTCTGCTCTGTATCGGGAGGCCTTAGAGTCTCCGGAACATTGTTCACCTCA| |CCATACAGCACTCAGGCAAGCTATTCTGTGTTGGGGTGAGTTGATGAATCTGGCCACCTGGGTGGGAAGTAATTTGGAAGACCCAGCATCCAGGGAATTA
Host Sequence
Chromosome
chr1
Cytoband
p31.1
Reference genome
GRCh37/hg19
Start
80934653/80468968 (Hg38)
End
80934653/80468968 (Hg38)
Orient
+
Fragile sites / regions
FRA1L
Nearest miRNA
hsa-mir-101-1/Upstream/3408766; hsa-mir-11399/Downstream/4664826;
Nearest TSS
ENST00000473358/Upstream/94347; ENST00000418041/Downstream/66787;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/137767, chr1-CpG: 281/Downstream/1331345
Upstream sequence
tattacatcaaaaaatactcataattgattttttatacagtagaaggtaATGAGTAAATCAATTTGTTGAAAATTTTAGATGGTAAATGAATAATTACAa
Downstream sequence
taaaatgtctctcttcatatctagtaatgttgcattgaagtctgctttgactgatattaatgtaattacatcagatttattttgtcagttatttttatga
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate