VISDB Viral Integration Site DataBase

VIS ID

TVIS10014792

Fusion event

HBV-FSIP2 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1998

Orient

-

Integrated sequence

GCATGGACATTGACCCGTATAAAGAATTTGGAGCTTCTGTGGAGTTACTCTCTTTTTTGCCTTCTGACTTCTTTCCTTCTATTCGAGATCTCCTCGACAC| |CGCCTCTGCTCTGTATCGGGAGGCCTTAGAGTCTCCGGAACATTGTTCACCTCACCATACAGCACTCAGGCAAGCTATTCTGTGTTGGGGTGAGTTGATG

Chromosome

chr2

Cytoband

q32.1

Reference genome

Start

End

186622914/185758187 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-4646-3p ; hsa-mir-6516-5p ; hsa-mir-4433b-5p ; hsa-mir-3678-3p ; hsa-mir-1273h-3p ; hsa-mir-6124 ; hsa-mir-4771 ; hsa-mir-3166 ; hsa-mir-339-5p ; hsa-mir-4275 ; hsa-mir-4272 ; hsa-mir-4496 ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-583 ; hsa-mir-6818-3p ; hsa-mir-6787-3p ; hsa-mir-8067 ; hsa-mir-6508-5p ; hsa-mir-5685 ; hsa-mir-4690-3p ; hsa-mir-8063 ; hsa-mir-6771-3p ; hsa-mir-548as-3p ; hsa-mir-7158-5p ; hsa-mir-3679-5p ; hsa-mir-1185-5p ; hsa-mir-767-3p ; hsa-mir-651-3p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-7702 ; hsa-mir-502-5p ; hsa-mir-4694-5p ; hsa-mir-3140-3p ; hsa-mir-4641 ; hsa-mir-1915-5p ; hsa-mir-6841-3p ; hsa-mir-8060 ; hsa-mir-6809-3p ; hsa-mir-4753-3p ; hsa-mir-7977 ; hsa-mir-466 ; hsa-mir-4672 ; hsa-mir-3941 ; hsa-mir-3124-3p ; hsa-mir-130b-5p ; hsa-mir-586 ; hsa-mir-208b-5p ; hsa-mir-208a-5p ; hsa-mir-4643 ; hsa-mir-4789-3p

Nearest miRNA

hsa-mir-10b/Upstream/1379143; hsa-mir-1244-1/Downstream/2539305;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/19004, chr2-CpG: 87/Downstream/727583

Upstream sequence

attatgtaactttataaaaatggcttcttttactcagcataataccctgaaattcatccaagttacagcatgtgtcaatagtttgttcctttccattgta

Downstream sequence

tggatgcaccagtttgttttttcattcttcaatcaaaagaaatttgaaattttgggttgtttccatgttcgggtgattatgTATTGAATGACTAGAAGTA