VISDB Viral Integration Site DataBase

VIS ID

TVIS10014793

Fusion event

HBV-FSIP2 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

984

Orient

+

Integrated sequence

TGTAATTGGAAGTTGGGGTACTTTACCACAGGAACATATTGTACGGAAACTCAAGCAATGTTTTCGAAAACTGCCTGTAAATAGACCTATTGATTGGAAA| |GTATGTCAAAGAATTGTGGGTCTTTTGGGCTTTGCTGCCCCTTTTACACAATGTGGCTATCCTGCCTTGATGCCTTTATATGCATGTATACAATCTAAGC

Chromosome

chr2

Cytoband

q32.1

Reference genome

Start

End

186641089/185776362 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-4646-3p ; hsa-mir-6516-5p ; hsa-mir-4433b-5p ; hsa-mir-3678-3p ; hsa-mir-1273h-3p ; hsa-mir-6124 ; hsa-mir-4771 ; hsa-mir-3166 ; hsa-mir-339-5p ; hsa-mir-4275 ; hsa-mir-4272 ; hsa-mir-4496 ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-583 ; hsa-mir-6818-3p ; hsa-mir-6787-3p ; hsa-mir-8067 ; hsa-mir-6508-5p ; hsa-mir-5685 ; hsa-mir-4690-3p ; hsa-mir-8063 ; hsa-mir-6771-3p ; hsa-mir-548as-3p ; hsa-mir-7158-5p ; hsa-mir-3679-5p ; hsa-mir-1185-5p ; hsa-mir-767-3p ; hsa-mir-651-3p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-7702 ; hsa-mir-502-5p ; hsa-mir-4694-5p ; hsa-mir-3140-3p ; hsa-mir-4641 ; hsa-mir-1915-5p ; hsa-mir-6841-3p ; hsa-mir-8060 ; hsa-mir-6809-3p ; hsa-mir-4753-3p ; hsa-mir-7977 ; hsa-mir-466 ; hsa-mir-4672 ; hsa-mir-3941 ; hsa-mir-3124-3p ; hsa-mir-130b-5p ; hsa-mir-586 ; hsa-mir-208b-5p ; hsa-mir-208a-5p ; hsa-mir-4643 ; hsa-mir-4789-3p

Nearest miRNA

hsa-mir-10b/Upstream/1397318; hsa-mir-1244-1/Downstream/2521130;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/37179, chr2-CpG: 87/Downstream/709408

Upstream sequence

ccatctcaaaaaTTAAATAAAATGAGaaaaattaaaaattataataataataGCTTTCATGCTCTATATTTTACTATGGATGTACAACTCAACACTGTAC

Downstream sequence

ATTTTGATGTCAGTTGTCCTGCTTTTCATTGCTTTATACGTATTTTTTAACTTTCCCTCTTAGAATCCCTTTCAGTGTAATGGTTACCTGGGTGTATATT