Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10014794
Fusion event
HBV-USP9Y integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1736
Orient
+
Integrated sequence
CTTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAGGACTGGGAG| |GAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCT
Host Sequence
Chromosome
chrY
Cytoband
q11.221
Reference genome
Start
End
14927954/12816019 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-3690-2/Upstream/8209791; hsa-mir-12120/Downstream/663158;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/278285, chrY-CpG: 52/Downstream/88614
Upstream sequence
ttgcatttcagtccaatccattcgattacattccttttgattccctgccagtcgattgcattgcatactacaccattccaaaggagttcattccattcta
Downstream sequence
TGTGGTGGTGAAGGAGGTGTTGCTATTATTAATTTGTTAGCCTGAAAATGGTGAACAGAATCACTGTTTTCATAGTATAAGCATCTTTTCTCTTTTCAAC
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.