Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10014795
Fusion event
HBV-USP9Y integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1979
Orient
-
Integrated sequence
TGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTTGGAGCTTCTGTGGAGTTACTCTCTTTTTTGCCTTCTGACTTCTTTCCTTCTA| |TTCGAGATCTCCTCGACACCGCCTCTGCTCTGTATCGGGAGGCCTTAGAGTCTCCGGAACATTGTTCACCTCACCATACAGCACTCAGGCAAGCTATTCT
Host Sequence
Chromosome
chrY
Cytoband
q11.221
Reference genome
Start
End
14928007/12816072 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-3690-2/Upstream/8209844; hsa-mir-12120/Downstream/663105;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/278338, chrY-CpG: 52/Downstream/88561
Upstream sequence
gttcattccattctatctccacactttccattccactctgtttgagtccattccattccagtccatttaattcaagggcattccactccattccattcca
Downstream sequence
AACAGAATCACTGTTTTCATAGTATAAGCATCTTTTCTCTTTTCAACTCAGCTTGTGAAGCACTTACTGAGTGGGAATATCTGCCCCCTGTTGGACCCCG
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.