Basic Information
VIS ID
TVIS10014798
Fusion event
HBV-chrX integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1810
Orient
+
Integrated sequence
AAGACTGTTTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGC| |ACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTG
Host Sequence
Chromosome
chrX
Cytoband
p21.3
Reference genome
End
25471062/25452945 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-23c/Upstream/5435758; hsa-let-7f-2/Downstream/3042610;
Upstream sequence
GAgcatatgaacttccagttctaccaccatttgttgaaagactttttttttttttgagacagagtctcactctgtcgcccaggctggagtgcagtgcctg
Downstream sequence
ATTTTAAAGTTTTTGAATCAGAGcaatggtgtgctggtaaatgtttaaaaaaagggatcttaattttcaaaatgccccaatttggagtgtctgttgattt
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate