PASD1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10014807
Fusion event
HBV-PASD1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
AP011098.1
Start
49
Orient
-
Integrated sequence
CTCCACAACATTCCACCAAGCTCTGCTAGATCCCAGAGTGAGGGGCCTA| |TATTTTCCTGCTGGTGGCTCCAGTTCCGGAACAGTAAACCCTGTTCCGACTACTGCCTCACCCATATCGTCAATCTTCTCGAGGACTGGGGACCCTGCAC
Host Sequence
Chromosome
chrX
Cytoband
q28
Reference genome
GRCh37/hg19
Start
150837858/151669386 (Hg38)
End
150837858/151669386 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRAXE ; FRAXF
Target gene
PASD1
Nearest miRNA
hsa-let-7f-2/Upstream/501060; hsa-mir-105-1/Downstream/289192;
Nearest TSS
ENST00000429181/Upstream/105657; ENST00000448726/Downstream/25738;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/271993, chrX-CpG: 98/Downstream/25321
Upstream sequence
aaaattagttaatagagattttgctctttagtttacacaggtgcatagtactcccttgtgttctgttacatataatgttttaaagcaaattaaccagtct
Downstream sequence
tgttttttctttgtgttgggagcattacaattcttttagctattttaaaatatacaatagattgttttaactctaattttcctacttgagtactagaact
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate