VISDB Viral Integration Site DataBase

VIS ID

TVIS10014809

Fusion event

HBV-SLC35F3 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

2890

Orient

-

Integrated sequence

CTACACGCAGCGCTTCATTTTGTGGGTCACCATATTCTTGGGAACAAGAGCTACAGCATGGGAGGTTGGTCTTCCAAACCTCGACAAGGCATGGGGACGA| |ATCTTTCTGTTCCCAATCCTCTGGGATTTTTTCCCGATCACCAGTTGGACCCTGCGTTCGGAGCCAACTCAAACAATCCAGATTGGGACTTCAACCCCAA

Chromosome

chr1

Cytoband

q42.2

Reference genome

Start

End

234103097/233967351 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-215-5p ; hsa-mir-192-5p

Nearest miRNA

hsa-mir-101-1/Upstream/343132; hsa-mir-1537/Downstream/339116;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/61640, chr1-CpG: 63/Downstream/246787

Upstream sequence

CCACCCCAAACATGTGTTTGAAGTTTTCTTTTAGGAACATCATTCCACTGTAAGAGCTTTAAAAAAGAAAAGCCAAGATTATTAGTAAGGATTCTAGGCA

Downstream sequence

TCTATATGTAGTTTTAACTTTACCTTATTAGATAAGAATTAATTTTTAGCTAGATTATCTGGCCGATGAACTATGATGAATATAAACAATTGAGGATCTC