Basic Information
VIS ID
TVIS10014823
Fusion event
HBV-chr5 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
AP011098.1
Start
36
Orient
-
Integrated sequence
CTCCACAACATTCCACCAAGCTCTGCTAGATCCCAG| |AGTGAGGGGCCTATATTTTCCTGCTGGTGGCTCCAGTTCCGGAACAGTAAACCCTGTTCCGACTACTGCCTCACCCATATCGTCAATCTTCTCGAGGACT
Host Sequence
Chromosome
chr5
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
19301244/19301135 (Hg38)
End
19301244/19301135 (Hg38)
Orient
+
Fragile sites / regions
FRA5E
Nearest miRNA
hsa-mir-10397/Upstream/2145143; hsa-mir-103a-1/Downstream/12634967;
Nearest TSS
ENST00000502646/Upstream/158789; ENST00000513573/Downstream/177501;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/1645521, chr5-CpG: 45/Downstream/1004318
Upstream sequence
CTTAACTTCGGTCTTAAAGTCATTTCTAATTAAAGCAAGCTCCCCTGTTAGTGTCTATATTATAGGatcctgtttgtattcttttagcgtttctcaacac
Downstream sequence
TCCCAGAGGTGCTTGTGACCCAGCTATGACCCAGCCTTCCGATTCTACTTTGAGGAATCCACAAACTAAGTTGGTTtatatatttatctattcatataca
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate