VISDB Viral Integration Site DataBase

VIS ID

TVIS10014825

Fusion event

HBV-SYNE1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

2659

Orient

+

Integrated sequence

AGGAGGACATTATTAATAGATGTCAACAATATGTGGGCCCTCTTACAGTTAATGAAAAAAGGAGATTAAAATTAATTATGCCTGCTAGGTTCTATCCTAA| |CCTTACCAAATATTTGCCCTTGGATAAAGGCATTAAACCTTATTATCCTGAACATGCAGTTAATCATTACTTCAAAACTAGGCATTATTTACATACTCTG

Chromosome

chr6

Cytoband

q25.2

Reference genome

Start

End

152891524/152570389 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-148b-3p ; hsa-mir-9-5p ; hsa-mir-124-3p ; hsa-mir-26b-5p ; hsa-let-7b-5p

Nearest miRNA

hsa-mir-10398/Upstream/1467613; hsa-mir-1202/Downstream/2282971;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/268044, chr6-CpG: 64/Downstream/66286

Upstream sequence

actgtatgttcagtatgatgtcaaacttataaaaataaaattttgtatattaacaatggtaatctctgggtggtgaaagcatgggcgtttttttaatctt

Downstream sequence

TAGATTCTCTCCTGTGAACAGGATAGCCAGGGAATTAGCATACCTTTTGGGTCAGGTAGATGGGGTAGTCAGTGAGATCTCCGAAAAACAAAAAGGTTGC